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Krakau S, Richard H, Marsico A. PureCLIP: Capturing Target-Specific protein-RNA Interaction Footprints from Single-Nucleotide CLIP-Seq Data. Genome Biology. 18(1), (2017). |
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Dequeker C, Laine E, Carbone A*. INTerface Builder: a fast protein-protein interface reconstruction tool. J Chem Inf Model. (2017). |
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Nadalin F, Carbone A*. Protein-protein interaction specificity is captured by contact preferences and interface composition. Bioinformatics. (2017). |
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Bernardes JS, Vaquero C, Carbone A*. Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes. Malar J. 16(1), (2017). |
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Laine E Decrypting how protein move and change their shape. in Proceeding of 16th International Symposium on Mathematical and Computational Biology. Edited by: Rubem P Mondaini (Federal University of Rio de Janeiro, Brazil). Nankai University, Tianjin, China, 30th Oct. – 5th Nov. 2016. Chern Institute of Mathematics. (2017) |
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Carbone A* Conservation, co-évolution et dynamique : de la séquence à la fonction. in Colloque de Cerisy “Sciences de la vie, sciences de l’information”. Edited by: Maurel M-C., Pomerol J-C., Gaudin T., Lacroix D., ISTE Éditions Ltd (2017) |
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Amato A, Dell'Aquila G, Musacchia F, Annunziata R, Ugarte A, Maillet N, Carbone A*, Riberà d'Alcalà M, Sanges R, Iudicone D, Ferrante MI. Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions. Scientific Reports. 7(1), (2017). |
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Oteri F, Nadalin F, Champeimont R, Carbone A*. BIS2Analyzer: a server for coevolution analysis of conserved protein families. Nucleic Acids Research. (2017). |
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Laine E, Carbone A*. Protein social behaviour makes a stronger signal for partner identification than surface geometry. Proteins. 85(1), pp.137-154 (2017). |
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Mohseni-Behbahani Y, Babaali B, Turdalyuly M. Persian sentences to phoneme sequences conversion based on recurrent neural networks. Open Computer Science. 6, pp.219–225 (2016). |
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Sarti E, Gladich I, Zamuner S, Correia BE, Laio A. Protein–protein structure prediction by scoring molecular dynamics trajectories of putative poses. Proteins: Structure, Function, and Bioinformatics. 84(9), pp.1312 - 1320 (2016). |
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Ripoche H, Laine E, Ceres N, Carbone A*. JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures. Nucleic Acids Research. (2016). |
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MetaSUB International Consortium, Lafontaine I, Richard H. The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report. Microbiome. 4(1), pp.24 (2016). |
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Bernardes JS, Zaverucha G, Vaquero C, Carbone A*. Improvement in protein domain identification is reached by breaking consensus, with the agreement of many profiles and domain co-occurrence. PLoS Computational Biology. 12(7), (2016). |
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Vamparys L, Laurent B, Carbone A*, Sacquin-Mora S. Great interactions: How binding incorrect partners can teach us about protein recognition and function. Proteins. (2016). |
