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Campos DA, Pereira EC, Jardim R, Cuadrat RRC, Bernardes JS, Dávila AMR. Homology Inference Based on a Reconciliation Approach for the Comparative Genomics of Protozoa. Evolutionary Bioinformatics. 14, pp.1176934318785138 (2018). |
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Briquet S, Ourimi A, Pionneau C, Bernardes JS, Carbone A*, Chardonnet S, Vaquero C. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. PLoS One. (2018). |
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Ugarte A, Vicedomini R, Bernardes JS, Carbone A*. A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling. Microbiome. (2018). |
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Agier N, Delmas S, Zhang Q, Fleiss A, Jaszczyszyn Y, van Dijk E, Thermes C, Weigt M, Cosentino Lagomarsino M, Fischer G. The evolution of the temporal program of genome replication. Nat Commun. 9(1), pp.2199 (2018). |
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Abdollahi N, Albani A, Anthony E, Baud A, Cardon M, Clerc R, Czernecki D, Conte R, David L, Delaune A, Djerroud S, Fourgoux P, Guiglielmoni N, Laurentie J, Lehmann N, Lochard C, Montagne R, Myrodia V, Opuu V, Parey E, Polit L, Privé S, Quignot C, Ruiz-Cuevas M, Sissoko M, Sompairac N, Vallerix A, Verrecchia V, Delarue M, Guérois R, Ponty Y, Sacquin-Mora S, Carbone A*, Froidevaux C, Le Crom S, Lespinet O, Weigt M, Abboud S, Bernardes JS, Bouvier G, Dequeker C, Ferré A, Fuchs P, Lelandais G, Poulain P, Richard H, Schweke H, Laine E, Lopes* A. Meet-U: Educating through research immersion. PLOS Computational Biology. 14, pp.1-10 (2018). |
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Figliuzzi M, Barrat-Charlaix P, Weigt M. How Pairwise Coevolutionary Models Capture the Collective Residue Variability in Proteins?. Molecular Biology and Evolution. pp.msy007 (2018). |
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Barrat-Charlaix P, Weigt M. De la variabilité des séquences à la prédiction structurale et fonctionnelle : modélisation de familles de protéines homologues. Biologie Aujourd’hui. 211(3), pp.239-244 (2017). |
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Cocco S, Feinauer C, Figliuzzi M, Monasson R, Weigt M. Inverse Statistical Physics of Protein Sequences: A Key Issues Review. Rep. Prog. Phys. (2017). |
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Szurmant H, Weigt M. Inter-residue, inter-protein and inter-family coevolution: bridging the scales. Curr Opin Struct Biol. 50, pp.26-32 (2017). |
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Couce A, Caudwell LViraphong, Feinauer C, Hindré T, Feugeas J-P, Weigt M, Lenski RE, Schneider D, Tenaillon O. Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria. Proceedings of the National Academy of Sciences. 114, pp.E9026-E9035 (2017). |
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Bernardes JS, Vaquero C, Carbone A*. Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes. Malar J. 16(1), (2017). |
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Uguzzoni G, Lovis SJohn, Oteri F, Schug A, Szurmant H, Weigt M. Large-scale identification of coevolution signals across homo-oligomeric protein interfaces by direct coupling analysis. Proceedings of the National Academy of Sciences. 114, pp.E2662-E2671 (2017). |
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Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft J-U, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H, Soyer OS. Challenges in microbial ecology: building predictive understanding of community function and dynamics. ISME J. 10(11), pp.2557-2568 (2016). |
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Barrat-Charlaix P, Figliuzzi M, Weigt M. Improving landscape inference by integrating heterogeneous data in the inverse Ising problem. Sci. Rep. 6, 37812, (2016). |
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Coucke A, Uguzzoni G, Oteri F, Cocco S, Monasson R, Weigt M. Direct coevolutionary couplings reflect biophysical residue interactions in proteins. The Journal of Chemical Physics. 145, pp.174102-17 (2016). |
