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Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations.
Title | Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. |
Publication Type | Journal Article |
Year of Publication | 2012 |
Authors | Good, BH, IM Rouzine, Balick, DJ, Hallatschek, O, Desai, MM |
Journal | Proc Natl Acad Sci U S A |
Volume | 109 |
Issue | 13 |
Pagination | 4950-5 |
Date Published | 2012 Mar 27 |
ISSN | 1091-6490 |
Keywords | Adaptation, Physiological, Genetic Fitness, Mutation, Population Density, Probability, Reproduction, Asexual |
Abstract | When large asexual populations adapt, competition between simultaneously segregating mutations slows the rate of adaptation and restricts the set of mutations that eventually fix. This phenomenon of interference arises from competition between mutations of different strengths as well as competition between mutations that arise on different fitness backgrounds. Previous work has explored each of these effects in isolation, but the way they combine to influence the dynamics of adaptation remains largely unknown. Here, we describe a theoretical model to treat both aspects of interference in large populations. We calculate the rate of adaptation and the distribution of fixed mutational effects accumulated by the population. We focus particular attention on the case when the effects of beneficial mutations are exponentially distributed, as well as on a more general class of exponential-like distributions. In both cases, we show that the rate of adaptation and the influence of genetic background on the fixation of new mutants is equivalent to an effective model with a single selection coefficient and rescaled mutation rate, and we explicitly calculate these effective parameters. We find that the effective selection coefficient exactly coincides with the most common fixed mutational effect. This equivalence leads to an intuitive picture of the relative importance of different types of interference effects, which can shift dramatically as a function of the population size, mutation rate, and the underlying distribution of fitness effects. |
DOI | 10.1073/pnas.1119910109 |
Alternate Journal | Proc. Natl. Acad. Sci. U.S.A. |
PubMed ID | 22371564 |
PubMed Central ID | PMC3323973 |
Grant List | R01 GM086793 / GM / NIGMS NIH HHS / United States R01GM 086793 / GM / NIGMS NIH HHS / United States R37CA 089441 / CA / NCI NIH HHS / United States R01AI 063926 / AI / NIAID NIH HHS / United States R37 CA089441 / CA / NCI NIH HHS / United States R01 AI063926 / AI / NIAID NIH HHS / United States |