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Vakirilis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel J-P, Blanpain L, Carbone A*, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G. Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus. Genome Res. (2016). |
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Champeimont R, Laine E, Hu S-W, Penin F, Carbone A*. Coevolution analysis of Hepatitis C virus genome to identify the structural and functional dependency network of viral proteins. Scientific Reports. 6, (2016). |
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Fortunato AE, Jaubert M, Enomoto G, Bouly J-P, Raniello R, Thaler M, Malviya S, Bernardes JS, Rappaport F, Gentili B, Huysman MJJ, Carbone A*, Bowler C, Riberà d'Alcalà M, Ikeuchi M, Falciatore A. Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean. The Plant Cell. 28(3), pp.616 - 628 (2016). |
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Karami Y, Laine E, Carbone A*. Dissecting protein architecture with communication blocks and communicating segment pairs. BMC Bioinformatics. 17, pp.133–148 (2016). |
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Carbone A* L'encodage des réseaux évolutifs dans les protéines: de la séquence à la fonction. in Leçon de mathématiques d'aujourd'hui. Cassini. (2016) |
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Sarti E, Granata D, Seno F, Trovato A, Laio A. Native fold and docking pose discrimination by the same residue-based scoring function. Proteins: Structure, Function, and Bioinformatics. 83(4), pp.621 - 630 (2015). |
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Dayde M, Depardon B, Franc A, Gibrat J-F, Guilllier R, Karami Y, Sutter F, Taddese B, Chabbert M, Therond S E-Biothon: An experimental platform for bioinformatics. in International Conference on Computer Science and Information Technologies (CSIT). Yerevan, Armenia, Sept. (2015) |
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Laine E, Carbone A*. Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions. PLoS Comput Biol. 11(12), pp.e1004580 (2015). |
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Bernardes JS, Vieira FRJ, Zaverucha G, Carbone A*. A multi-objective optimization approach accurately resolves protein domain architectures. Bioinformatics. (2015). |
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Gillet-Markowska A, Richard H, Fischer G, Lafontaine I. Ulysses: accurate detection of low-frequency structural variations in large insert-size sequencing libraries. Bioinformatics. 31(6), pp.801-8 (2015). |
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Drillon G, Carbone A*, Fischer G. SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes. PLoS One. 9(3), pp.e92621 (2014). |
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Champeimont R, Carbone A*. SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis. BMC Bioinformatics. 15, pp.391 (2014). |
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Couvé S, Ladroue C, Laine E, Mahtouk K, Guégan J, Gad S, Le Jeune H, Le Gentil M, Nuel G, Kim WY, Lecomte B, Pagès J-C, Collin C, Lasne F, Benusiglio PR, de Paillerets BBressac-, Feunteun J, Lazar V, Gimenez-Roqueplo A-P, Mazure NM, Dessen P, Tchertanov L, Mole DR, Kaelin W, Ratcliffe P, Richard S, Gardie B. Genetic Evidence of a Precisely Tuned Dysregulation in the Hypoxia Signaling Pathway during Oncogenesis. Cancer Res. 74(22), pp.6554-64 (2014). |
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Schulz MH, Weese D, Holtgrewe M, Dimitrova V, Niu S, Reinert K, Richard H. Fiona: a parallel and automatic strategy for read error correction. Bioinformatics. 30(17), pp.i356-63 (2014). |
